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Gluten-Free Almond Flour Pumpkin Muffins | Cozy Fall Baking Made Easy

  • Writer: Julia Hardin
    Julia Hardin
  • Oct 27
  • 3 min read

Updated: Nov 14

Cozy, wholesome, and perfectly spiced — made with nourishing ingredients

There’s something magical about the smell of pumpkin spice on a crisp fall morning. These Gluten-Free Almond Flour Pumpkin Muffins are soft, tender, and warmly spiced — the kind of bake that feels comforting, seasonal, and nourishing all at once.

Unlike many bakery muffins, this recipe uses almond flour for healthy fats, pumpkin puree for natural moisture, and maple syrup for gentle sweetness, so each bite feels satisfying without being overly heavy or sugary. Plus, everything comes together in one bowl — ideal for quick meal prep, weekday mornings, and cozy weekend bakes.


Chocolate muffins wrapped in newspaper-patterned paper on a wooden board, one muffin is split to reveal chocolate chips, cozy setting.


Why This Recipe Works

  • Made with wholesome, gluten-free ingredients

  • Naturally sweetened (no refined sugar)

  • Moist and fluffy — not dense like many almond flour muffins

  • Beginner-friendly & ready in under 40 minutes

  • Freezer-friendly for easy batch prep


Quick Recipe Facts

  • Servings: 10–12 muffins

  • Prep Time: 10 minutes

  • Cook Time: 25 minutes

  • Total Time: 35 minutes

  • Dietary Info: Gluten-Free, Grain-Free, Dairy-Free (if using dairy-free chocolate chips)

  • Skill Level: Beginner-friendly 👩‍🍳

“This recipe quickly became a favorite in my kitchen — even my pickiest taste-tester couldn’t stop at one muffin!”

Gluten-Free Almond Flour Pumpkin Muffins | Cozy Fall Baking Made Easy


Baking ingredients on a white surface: eggs, flour, pumpkin puree, cocoa, chocolate chips, spices, with cupcake liners nearby.

Ingredients


Dry Ingredients

  • 1 ½ cups almond flour

  • ½ tsp salt

  • ¾ tsp baking soda

  • 2 ½ tsp ground cinnamon

  • ¼ tsp ground nutmeg

  • Optional: 1–2 pinches ground ginger or cloves for deeper spice flavor


Wet Ingredients

  • 4 large eggs

  • ¾ cup canned pumpkin puree (not pumpkin pie filling)

  • ⅓ cup pure maple syrup

  • 1 tsp vanilla extract


Mix-ins

  • ½ cup chocolate chips (or chopped nuts, dried cranberries, or pumpkin seeds)


💡  Ingredient Insight: Almond flour makes these muffins naturally moist and protein-rich, while pumpkin adds fiber and nutrients — a great combination for sustained energy and no dryness.



How to Make Gluten-Free Almond Flour Pumpkin Muffins


Step 1: Prepare the Batter Base

In a medium bowl, whisk together almond flour, salt, baking soda, cinnamon, and nutmeg.

This step prevents clumping and ensures even flavor distribution.


Step 2: Whisk the Wet Ingredients

In a separate large mixing bowl, combine eggs, pumpkin puree, maple syrup, and vanilla.

Whisk until the mixture becomes smooth and glossy.


Step 3: Bring the Batter Together

Pour the dry ingredients into the wet mixture.

Stir gently until just combined — overmixing can make almond flour baked goods dense.

Fold in chocolate chips (or your chosen mix-ins).


Step 4: Fill the Muffin Pan

Line a muffin tin with paper liners.

Spoon batter into each cup about ¾ full for evenly domed muffin tops.


Step 5: Bake

Bake at 180°C (350°F) for 25 minutes, or until a toothpick inserted in the center comes out clean. Cool for at least 10 minutes before removing from the pan to set texture and flavor.


Six muffin batter portions in printed paper cups sit on a black tray on a wooden surface. The batter has a glossy, orange-brown hue.


Pro Tip: These muffins stay fresh for 3–4 days in an airtight container at room temperature or up to a week in the fridge. They also freeze beautifully!

Storage + Meal Prep Tips

  • Room temp: Store in airtight container for 3–4 days

  • Refrigerator: Keeps fresh for up to 1 week

  • Freezer: Freeze up to 3 months — thaw overnight or warm for 15 seconds in the microwave


Freshly baked muffins in newspaper-patterned wrappers on a cooling rack, with a golden-brown top, set against a white background.

Serving Ideas

Pair these muffins with:

  • A latte, chai tea, or matcha

  • A drizzle of almond butter

  • Fresh berries

  • Greek yogurt for added protein

Perfect for breakfast, snacks, lunchbox treats, or cozy desserts.


Recipe Variations

Variation

How to Adjust

Nut-Free

Use gluten-free oat flour instead of almond flour

Dairy-Free

Use dairy-free chocolate chips or omit

More Texture

Add ¼ cup chopped walnuts or pecans

Mini Muffins

Bake 12–15 minutes


Why You’ll Love This Recipe

  • Nourishing whole ingredients

  • Comforting seasonal flavor

  • Easy enough for beginner bakers

  • Kid-approved & freezer-friendly


Share Your Bake!

If you make these muffins, tag @wellnesswhiskhub or use #WellnessWhiskHub — I’d love to see your cozy kitchen moments


Chocolate muffins in newspaper wrappers on a wooden board. One muffin is halved, revealing a moist, chocolatey interior. Rustic and inviting.


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